Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs149209614 chr12:56723586 A/G 1.01E-7 177 25.35 29.13 0.8 KM Plot
PCPG rs149241310 chr12:56653560 A/G 1.09E-7 177 25.17 27.33 0.8 KM Plot
PCPG rs149276116 chr12:6592004 C/CAGG 0.000283 176 16.3 26.27 25.42 KM Plot
PCPG rs149363279 chr10:131951035 TATATGTCTTGGG/T 0 177 25.47 24.47 3.17 KM Plot
PCPG rs149428725 chr2:118538473 T/C 1.67E-5 177 24.85 30.33 11.65 KM Plot
PCPG rs149456126 chr17:74698598 AAAG/A 0.000168 176 25.97 21.1 13.5 KM Plot
PCPG rs149462074 chr2:242559840 G/C 3.01E-5 174 25.87 27.27 20.28 KM Plot
PCPG rs149571649 chr7:105148092 T/G 5.04E-5 178 20.17 28.95 2.28 KM Plot
PCPG rs149682044 chr16:88634316 G/A 0.000109 171 25.53 23.53 14.47 KM Plot
PCPG rs149711377 chr2:24319987 T/C 0.000114 177 25.4 26.92 17.43 KM Plot
PCPG rs149790528 chr7:36173997 CAT/C 0.000433 177 25.6 24.6 14.37 KM Plot
PCPG rs149890031 chr7:105149260 A/T 5.04E-5 178 20.17 28.95 2.28 KM Plot
PCPG rs149980726 chr12:56656265 G/A 1.09E-7 177 25.17 27.33 0.8 KM Plot
PCPG rs150045697 chr7:105149419 G/A 5.04E-5 178 20.17 28.95 2.28 KM Plot
PCPG rs150095604 chr16:89801466 C/CGGAGGT 0.000194 174 25.87 20.28 36.37 KM Plot